Package: extractox 0.1.9001
extractox: Extract Tox Info from Various Databases
Extract toxicological and chemical information from databases maintained by scientific agencies and resources, including the Comparative Toxicogenomics Database <https://ctdbase.org/>, the Integrated Chemical Environment <https://ice.ntp.niehs.nih.gov/>, the Integrated Risk Information System <https://cfpub.epa.gov/ncea/iris/>, the CompTox Chemicals Dashboard Resource Hub <https://www.epa.gov/comptox-tools/comptox-chemicals-dashboard-resource-hub>, and PubChem <https://pubchem.ncbi.nlm.nih.gov/>.
Authors:
extractox_0.1.9001.tar.gz
extractox_0.1.9001.zip(r-4.5)extractox_0.1.9001.zip(r-4.4)extractox_0.1.9001.zip(r-4.3)
extractox_0.1.9001.tgz(r-4.4-any)extractox_0.1.9001.tgz(r-4.3-any)
extractox_0.1.9001.tar.gz(r-4.5-noble)extractox_0.1.9001.tar.gz(r-4.4-noble)
extractox_0.1.9001.tgz(r-4.4-emscripten)extractox_0.1.9001.tgz(r-4.3-emscripten)
extractox.pdf |extractox.html✨
extractox/json (API)
NEWS
| # Install 'extractox' in R: |
| install.packages('extractox', repos = c('https://c1au6i0.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/c1au6i0/extractox/issues
Pkgdown site:https://c1au6i0.github.io
Last updated 7 days agofrom:7e20a7f2c7. Checks:OK: 6 ERROR: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 19 2024 |
| R-4.5-win | OK | Dec 19 2024 |
| R-4.5-linux | ERROR | Dec 19 2024 |
| R-4.4-win | OK | Dec 19 2024 |
| R-4.4-mac | OK | Dec 19 2024 |
| R-4.3-win | OK | Dec 19 2024 |
| R-4.3-mac | OK | Dec 19 2024 |
Exports:extr_casrn_from_cidextr_chem_infoextr_comptoxextr_ctdextr_iceextr_ice_assay_namesextr_irisextr_monographextr_pubchem_femaextr_pubchem_ghsextr_tetramerextr_toxwrite_dataframes_to_excel
Dependencies:askpassbase64enccellrangerclicpp11crayoncurldata.treedplyrfansigenericsgluehmshttrhttr2janitorjsonlitelifecyclelubridatemagrittrmimeopensslpillarpingrpkgconfigprettyunitsprocessxprogresspspurrrR6rappdirsreadxlrematchrlangrvestselectrsnakecasestringistringrsystibbletidyrtidyselecttimechangeutf8vctrswebchemwithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Retrieve CASRN for PubChem CIDs | extr_casrn_from_cid |
| Query Chemical Information from IUPAC Names | extr_chem_info |
| Download and Extract Data from CompTox Chemistry Dashboard | extr_comptox |
| Extract Data from the CTD API | extr_ctd |
| Extract Data from NTP ICE Database | extr_ice |
| Extract Assay Names from the ICE Database | extr_ice_assay_names |
| Extract Data from EPA IRIS Database | extr_iris |
| Retrieve WHO IARC Monograph Information | extr_monograph |
| Extract FEMA from PubChem | extr_pubchem_fema |
| Extract GHS Codes from PubChem | extr_pubchem_ghs |
| Extract Tetramer Data from the CTD API | extr_tetramer |
| Extract Toxicological Information from Multiple Databases | extr_tox |
| Write Dataframes to Excel | write_dataframes_to_excel |
