Package: extractox 1.0.0.9000
extractox: Extract Tox Info from Various Databases
Extract toxicological and chemical information from databases maintained by scientific agencies and resources, including the Comparative Toxicogenomics Database <https://ctdbase.org/>, the Integrated Chemical Environment <https://ice.ntp.niehs.nih.gov/>, the Integrated Risk Information System <https://cfpub.epa.gov/ncea/iris/>, Provisional Peer-Reviewed Toxicity Values <https://www.epa.gov/pprtv/provisional-peer-reviewed-toxicity-values-pprtvs-assessments>, the CompTox Chemicals Dashboard Resource Hub <https://www.epa.gov/comptox-tools/comptox-chemicals-dashboard-resource-hub>, PubChem <https://pubchem.ncbi.nlm.nih.gov/>, and others.
Authors:
extractox_1.0.0.9000.tar.gz
extractox_1.0.0.9000.zip(r-4.5)extractox_1.0.0.9000.zip(r-4.4)extractox_1.0.0.9000.zip(r-4.3)
extractox_1.0.0.9000.tgz(r-4.5-any)extractox_1.0.0.9000.tgz(r-4.4-any)extractox_1.0.0.9000.tgz(r-4.3-any)
extractox_1.0.0.9000.tar.gz(r-4.5-noble)extractox_1.0.0.9000.tar.gz(r-4.4-noble)
extractox_1.0.0.9000.tgz(r-4.4-emscripten)extractox_1.0.0.9000.tgz(r-4.3-emscripten)
extractox.pdf |extractox.html✨
extractox/json (API)
NEWS
# Install 'extractox' in R: |
install.packages('extractox', repos = c('https://c1au6i0.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/c1au6i0/extractox/issues
Pkgdown site:https://c1au6i0.github.io
Last updated 2 months agofrom:c928ad7713. Checks:9 OK. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 09 2025 |
R-4.5-win | OK | Mar 09 2025 |
R-4.5-mac | OK | Mar 09 2025 |
R-4.5-linux | OK | Mar 09 2025 |
R-4.4-win | OK | Mar 09 2025 |
R-4.4-mac | OK | Mar 09 2025 |
R-4.4-linux | OK | Mar 09 2025 |
R-4.3-win | OK | Mar 09 2025 |
R-4.3-mac | OK | Mar 09 2025 |
Exports:extr_casrn_from_cidextr_chem_infoextr_comptoxextr_ctdextr_iceextr_ice_assay_namesextr_irisextr_monographextr_pprtvextr_pubchem_femaextr_pubchem_ghsextr_tetramerextr_toxwith_extr_sandboxwrite_dataframes_to_excel
Dependencies:askpassbase64enccellrangerclicpp11crayoncurldata.treedplyrfansigenericsgluehmshttrhttr2janitorjsonlitelifecyclelubridatemagrittrmimeopensslpillarpingrpkgconfigprettyunitsprocessxprogresspspurrrR6rappdirsreadxlrematchrlangrvestselectrsnakecasestringistringrsystibbletidyrtidyselecttimechangeutf8vctrswebchemwithrxml2
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Retrieve CASRN for PubChem CIDs | extr_casrn_from_cid |
Query Chemical Information from IUPAC Names | extr_chem_info |
Download and Extract Data from CompTox Chemistry Dashboard | extr_comptox |
Extract Data from the CTD API | extr_ctd |
Extract Data from NTP ICE Database | extr_ice |
Extract Assay Names from the ICE Database | extr_ice_assay_names |
Extract Data from EPA IRIS Database | extr_iris |
Retrieve WHO IARC Monograph Information | extr_monograph |
Extract Data from EPA PPRTVs | extr_pprtv |
Extract FEMA from PubChem | extr_pubchem_fema |
Extract GHS Codes from PubChem | extr_pubchem_ghs |
Extract Tetramer Data from the CTD API | extr_tetramer |
Extract Toxicological Information from Multiple Databases | extr_tox |
Run Code in a Temporary Sandbox Environment | with_extr_sandbox |
Write Dataframes to Excel | write_dataframes_to_excel |